Publications

 

 

Author(s)
Title
Journal
Lab
Tal Ben-Horin, Matthew Iacchei, Kim A. Selkoe, Thien T. Mai & Rob J. ToonenEight polymorphic microsatellite loci for the California spiny lobster, Panulirus interruptusMolecular Ecology ResourcesR. Toonen
Madeline JH van Oppen, Jo-Ann Leong, Ruth D. GatesCoral-virus Interactions: A Double-Edged Sword?SymbiosisR. Gates
Deborah J. Gochfeld, Greta S. AebyAntibacterial Chemical Defenses in Hawaiian Corals Provide Possible Protection from DiseaseMarine Ecology Progress SeriesG. Aeby
Schultz, J.K., J.D. Baker, R.J. Toonen & B.W. Bowen.Extremely low genetic diversity in the endangered Hawaiian monk seal (Monachus schauinslandi)Journal of HeredityR. Toonen
Mooney, Terrance Aran; Nachtigall, Paul E.; Castellote, Manuel; Taylor, Kristen A.; Pacini, Aude F.; Esteban, Jose-AntonioHearing Pathways and Directional Sensitivity of the Beluga Whale, Delphinapterus LeucasJournal of Experimental Marine Biology and EcologyNachtigall, A. Pacini
Mayfield, Anderson B.; Hirst, Marissa B.; Gates, Ruth D.Gene Expression Normalization in a Dual-compartment System: A Real-time Quantitative PCR Protocol for symbiotic AnthozoansMolecular Ecology ResourcesR. Gates
Karl, Steve A.The effect of multiple paternity on the genetically effective size of a populationMolecular EcologyS. Karl
Kajiura, Steve M., Fitzgerald, Timothy P.Response of juvenile scalloped hammerhead sharks to electric stimuliZoology
Schultz JK, Feldheim KA, Gruber SH, Ashley MA, Bowen BWGlobal phylogeography and seascape ecology of the lemon sharks (Genus Negaprion)Molecular EcologyB. Bowen
Karen P. Maruska and Timothy C TricasCentral projections of octavolateralis nerves in the brain of a soniferous damselfish (Abudefduf abdominalis)Journal of Comparative NeurologyT. Tricas
Selkoe, Kim and Christine M. Henzler, Steven D. GainesSeascape genetics and the spatial ecology of marine populationsFish and Fisheries
Palardy JE, Rodrigues LJ, Grottoli AGThe importance of zooplankton to the daily metabolic carbon requirements of healthy and bleached corals at two depthsJournal of Experimental Marine Biology and Ecology
Caroline V. Palmer, Melissa S. Roth and Ruth D. GatesRed Fluorescent protein responsible for pigmentation in trematode infected porites compressa TissuesBiological BulletinR. Gates
Erik Franklin, Corrinne V. Brong, Allexa R. Dow, Matthew T. CraigLength-weight and length-length relationships of three endemic butterflyfish species (Chaetodontidae) from coral reefs of the Northwestern Hawaiian Islands, USAJournal of Applied IchthyologyE. Franklin
T. Aran Mooney1, Paul E, Nachtigall1, Kristen A. Taylor1, Marianne H. Rasmussen2 and Lee A. Miller3Auditory temporal resolution of a wild white-beaked dolphin (Lagenorhynchus albirostris)Journal of Comparative PhsyiologyNachtigall
Eble, Jeff A. Toonen, Robert J., Bowen, Brian W.Endemism and dispersal: comparative phylogeography of three surgeonfishes across the Hawaiian ArchipelagoMarine BiologyR. Toonen, B. Bowen
Karl, Stephen A., Curtis, C, and BS StewartPleistocene population expansions of Antarctic sealsMolecular EcologyS. Karl
Lammers, Marc O., and Manuel CastellloteThe Beluga Whale Produces Two Pulses to Form Its Sonar SignalBiology LettersWhit Au (MMRP)
Olson, N.D., and T.D. Ainsworth, R.D. Gates, M. TakabayashiDiazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and Abundance in Correlation with Symbiotic DinoflagellatesJournal of Experimental Marine Biology and EcologyR. Gates
Apprill, Amy, Marlow, Heather Q., Martindale, Mark Q, and Michael RappeThe onset of microbial associations in the coral Pocillopora meandrinaThe ISME Journal (2009)M. Rappe
Hughes AD, Grottoli AG, Pease TK, Matsui YWhy all carbon is not equal: the Acquisition and Utilization of Photosynthetically and Heterotrophically Acquired Carbon in Non-Bleached and Bleached CoralsPNASPaul Jokiel (Point Lab)
Wagner, Daniel, Samuel E. Kahng, Robert J. ToonenObservations on the life history and feeding ecology of a specialized nudibranch predator (Phyllodesium poindimiei), with implications for biocontrol of an invasive octocoral (Carijoa riisei) in HawaiiJournal of Experimental Marine Biology & EcologyR. Toonen
Misumi, Ichiro, Teresa D. Lewis, and Jo-Ann C. LeongElicited cross-protection and specific antibodies in Mozambique tilapia (Oreochromis mossambicus) against two different immobilization serotypes of Cryptocaryon irritans isolated in HawaiiFish and Shellfish ImmunologyJo-Ann Leong
Supin, Alexander, Paul NachtigallForward Masking Based Gain Control in Odontocete Biosonar: An Evoked-PotentialJournal of the Acoustical Society of AmericaPaul Nachtigall
T. Aran Mooney, Paul E. Nachtigall, Stephanie VlachosSonar induced hearing loss in dolphinsBiology LettersPaul Nachtigall
Whitlow W. L. Au, Brian K. Branstetter, Kelly J. Benoit-Bird, Ronald A. KasteleinAcoustic basis for fish prey discrimination by echolocating dolphins and porpoisesJournal of Acoustical Society of AmericaWhit Au (MMRP)
Alexander Eiler1, Darin H. Hayakawa1, Matthew J. Church2, David M. Karl2, and Michael S. Rappé1Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyreEnvironmental MicrobiologyMike Rappe
WK Fitt, RD Gates, O. Hoegh-Guldberg, JC Bythell, A Jatkar, AG Grottoli, M Gomez, P Fisher, TC Lajuenesse, O Pantos, R Iglesias-Prieto, DJ Franklin, LJ Rodrigues, JM Torregiani, R van Woesik, MP LesserResponse of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short-term thermal stress: the host does matter in determining the tolerance of corals to bleachingJournal of Experimental Marine Biology and Ecology (JEMBE)Ruth Gates
Michael Stat, Xavier Pochon, Rebecca OM Cowie, Ruth D GatesSpecificity in communities of Symbiodinium in corals from Johnston AtollMarine Ecology Progress SeriesR. Gates
Erik C, FranklinMarine Landscape Ecology Emerges from Developments in Seafloor Mapping, GPS, and GISOcean GlobeErik Franklin
Clyde S. Tamaru, Dave Bybee, Karen Brittain, Michelle Nguyen, Harry Ako and Adam BakerGrowth and Survival of Juvenile Feather Duster Worms, Sabellastarte spectabilis, Fed Live and Preserved AlgaeJournal of World Aquaculture SocietyJo-Ann Leong
Kuulei S. Rodgers, Paul Jokiel, Christopher Bird and Eric BrownQuantifying the condition of Hawaiian Coral ReefAquatic ConservationPaul Jokiel (Point Lab)
Cornelisen, C.D. and F.I.M ThomasPrediction and validation of flow dependent uptake of ammonium over a seagrass-hardbottom community in FloridaMarine Ecology Progress SeriesFlo Thomas
T. Aran Mooney, Aude F. Pacini, and Paul E. NachtigallFalse killer whale (Pseudorca crassidens) echolocation and acoustic disruption: Implications for long-line bycatch and depredationCanadian Journal of ZoologyP. Nachtigall
Michelle R. Gaither (corresponding author), Robert J. Toonen, D. Ross Robertson, Serge Planes, Brian W. BowenGenetic evaluation of marine biogeographical barriers: perspectives from two widespread Indo-Pacific snappers (Lutjanus kasmira and Lutjanus fulvus)Journal of BiogeographyR. Toonen/B. Bowen
Timothy C. Tricas, Stephen M Kajira & Adam P. SummersResponse of the hammerhead shark olfactory epithelim to amino acid stimuliJournal of Comparative Physiology AT. Tricas
Lesser, M.P., Slattery, M, Stat., Ojimi M., Gates, R. D. and Grottoli, A.Photoacclimatization by the Coral Montastraea cavernosa in the Mesophotic Zone: Light, Food and GeneticsEcology JournalR. Gates
Yancey, P.H., Heppenstall, M., Ly, Raymond, M., Andrell, R.M, Gates, R. D., Carter, V.L. and Hagedorn, M.Betaines and dimethylsulfoniopropionate (DMSP) as major osmolytes in Cnidaria with endosymbiotic dinoflagellatesJournal of Physiological and Biochemical ZoologyR. Gates
Hedouin, Laetitia, Amanda J. Reichelt-Brushett, Rudth D. gatesAssessment of metals and a metallois in sediments from Hawaiian coral reef systemsMarine Pollution BulletingR. Gates
T. S. Daly-Engel, R.D. Grubbs, K. Feldheim, B.W. Bowen, and R.J. ToonenIn multiple paternity beneficial or unavoidable? Sexual conflict, low multiple paternity and genetic diversity in the shortspine spurdog shark, Squalus mitsukuriiMarine Ecology Progress SeriesR. Toonen
Michelle McComb,Timothy C. Tricas and Stephen M. Kajiura,Enhanced visual fields in hammerhead sharksJournal of Experimental BiologyT. Tricas
Karen P. Maruska and Timothy C. TricasEncoding properties of auditory neurons in the brain of a soniferous damselfish: response to simple tones and complex conspecific signalsJournal of ComparativeT. Tricas
O'Malley, J., 2009Spatial and temporal variability in growth of Hawaiian spiny lobster in the Northwestern Hawaiian IslandsMarine and Coastal FisheriesR. Toonen
Christopher E. Bird1, Brenden S. Holland2, Brian W. Bowen1, and Robert J. Toonen1Ecological speciation in sympatric Hawaiian limpets (Cellana spp.)PNASB. Bowen, R. Toonen
Andrew M. Wiera, Spencer V. Nyholmb, Mark J. Mandela, R. Prisca Massengo-Tiasséc, Amy L. Schaefera,1, Irina Korolevad,2, Sandra Splinter-BonDurante, Bartley Brownf, Liliana Manzellad,3, Einat Snird, Hakeem Almabrazif, Todd E. Scheetzg, Maria de Fatima Bonaldod,3, Thomas L. Casavantf, M. Bento Soaresd,3, John E. Cronanc, Jennifer L. Reedh, Edward G. Rubya, Margaret J. McFall-Ngaia,4Transcriptional patterns in both host and bacterium underlie a daily rhythm of structural and metabolic change in a beneficial symbiosisProceedings of the National Academy of ScienceR. Gates
Yvonne L. Chan, Xavier Pochon, Marla A. Fisher, Daniel Wagner, Gregory T. Concepcion, Samuel Kahng, Robert J. Toonen, and Ruth D. GatesGeneralist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100m depths) coral LeptoserisBMC EcologyR. Toonen
John E. Randall & Jennifer K. SchultzPictichromis dinar, a new dottyback (Perciformes: Pseudochromidae) from IndonesiaaquaJ. Schutlz
Weersing K & R.J. Toonen (2009)Population genetics, larval dispersal, and connectivity in marine systemsMarine Ecology Progress SeriesR. Toonen
Concepcion, G.T., N.R Polato, I.B. Baums & R.J. Toonen (2009)Parallel development of microsatellite markers from four Hawaiian corals:Acropora cytherea, Fungia scutaria, Montipora capitata and Porites lobataConservation Genetic ResourcesR. Toonen
Reece, J.S., B.W. Bowen, K. Joshi, V. Goz, A.F. LarsonPhylogeography of two moray eels indicates high dispersal throughout the Indo-PacificJournal of HeredityB. Bowen
Concepcion GT, Kahng SE, Crepeau MW, Franklin EC, Coles SL, Toonen RJ (2009)Resolving natural ranges and marine invasions in a globally distributed octocoral (Genus Carijoa)Marine Ecology Progress Series (In Press)R. Toonen
M. Hagedorn1,2 , V.L. Carter1,2, J. C. Leong2 and F. W. Kleinhans 3Physiology and Cryosensitivity of Coral Endosymbiotic Algae (Symbiodinium)CryobiologyM. Hagedorn
Hagedorn1,2*, Virginia L. Carter1,2, Steven Ly3, Ray M. Andrell3, Paul H. Yancey3 Jo-Ann C. Leong2, and Frederick W. Kleinhans4Analysis of Internal Osmolality In Developing Coral Larvae, Fungia scutariaPhysiological Biochemical ZoologyM. Hagedorn
Michelle R. Gaither1*, Brian W. Bowen1, Robert J. Toonen1, Serge Planes2, Vanessa Messmer2, John Earle3, D. Ross Robertson4Genetic consequences of introducing allopatric lineages of Bluestriped Snapper (Lutjanus kasmira) to HawaiiMolecular EcologyMichelle Gaither (R. Toonen)
Michelle R. Gaither, Robert J. Toonen, Laurie Sorenson, Brian W. BowenIsolation and characterization of microsatellite markers for the Crimson Jobfish, Pristipomoides filamentosus (Lutjanidae)Conservation Genetics ResourcesMichelle Gaither (R. Toonen)
Tracy D. Ainsworth, Rebecca Vega Thurber and Ruth D. GatesThe future of coral reefs: a microbial perspectiveTrends in Ecology & EvolutionRuth Gates
Kelly S. Boyle and T. Erin CoxCourtship and spawning sounds in bird wrasse /Gomphosus varius/ and saddle wrasse /Thalassoma duppereyJournal of Fish BiologyTim Tricas
Au, Whitlow W.L., Dorian S. Houser, James J. Finneran, Wu-Jung Lee, Lois A. Talmadge, Patrick W. MooreThe acoustic field on the forehead of echolocating Atlantic bottlenose dolphins Tursiops truncatusJournal of the Acoustical Society of AmericaWhitlow Au (MMRP)
Badgley, Brian D., Florence I.M. Thomas, Valerie J. HarwoodThe Effects of Submerged Aquatic Vegetation on the Persistence of Environmental Populations of Enterococcus sppEnvironmental MicrobiologyFlo Thomas
Gochfeld, Deborah, J.Territorial damselfishes facilitate survival of corals by providing an association defense against predatorsMarine Ecology Progress SeriesJohn Stimson
Kim R. Andrews, Leszek Karczmarski, Whitlow W.L. Au, Susan H. Rickards, Cynthia A. Vanderlip, Brian W. Bowen, Robert J. ToonenRolling stones and stable homes: Social structure, habitat diversity, and population genetics of the Hawaiian spinner dolphin (Stenella longirostris)Molecular EcologyRob Toonen
Daly-Engel, T.S., K.M. Duncan, K.N. Holland, J.P. Coffey, H.A. Nance, R.J. Toonen, and B.W. Bowen (Submitted)Male-mediated dispersal in a global ring species, the scalloped hammerhead shark (Sphyrna lewini)Molecular EcologyKim Holland
Daniel H. Green1, Peter J. Edmunds1,2, Xavier Pochon3, Ruth D. Gates3The effects of substratum type on the growth, mortality, and photophysiology of juvenile corals in St. John, US Virgin IslandsJournal of Experimental Marine Biology and EcologyRuth Gates
Grant, W.S., F. Lecomte, B.W. Bowen.Biogeographical contingency and the evolution of tropical anchovies Cetengraulis from temperate EngraulisJournal of BiogeographyBrian Bowen
Xavier Pochon, Michael Stat, Misaki Takabayashi, Luis Chasqui, Leonard J. Chauka, Daniel D. K. Logan. Ruth D. Gates.Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environmentJournal of PhycologyRuth Gates
Gretchen E. Hofmann, James P. Barry, Peter J. Edmunds, Ruth D. Gates, David A. Hutchins, Terrie Klinger and Mary A. SewellThe Effect of Ocean Acidification on Polar, Tropical and Temperate Marine Calcifying Organisms: An Organism to Ecosystem PerspectiveAnnual Reviews of Ecology, Evolution and SystematicsRuth Gates
Hagedorn M, Carter VL (2010)Zebrafish Reproduction: Revisiting the Basics to Increase Sperm Cryopreservation Success (awaiting journal name - pending publication)PLoS OneMary Hagedorn
Craig, MT., Eble JE, and Bowen, BW. 2010Origins, ages and population histories: comparative phylogeography of endemic Hawaiian butterflyfishes (genus Chaetodon)Journal of BiogeographyBrian Bowen
Dorian Houser, James Finneran, Wu-jung Lee, Lois Talmadge, Whitlow AuThe Acoustic field on the forehead of echolocating Atlantic bottlenose dolphins Tursiops truncatusJournal of the Acoustical Society of AmericaWhitlow Au
Pochon X & Gates RD (2010)A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'iMolecular Phylogenetics and EvolutionXavier Pochon (Gates Lab)
Supin, Alexander Ya., Paul E. Nachtigall, Marlee BreeseTarget Distance-Dependent Variation of Hearing Sensitivity During EcholocationJournal of the Acoustical Society of AmericaPaul Nachtigall
Selkoe, K., J. Watson, C. White, T. Ben-Horin, M. Iacchei, S. Mitarai, D. Siegel, S. Gaines, R. ToonenTaking the chaos out of genetic patchiness: seascape genetics reveals ecological and oceanographic drivers of genetic patterns in three temperate reef speciesMolecular EcologyR. Toonen
Schultz, Jennifer K. 1*, Amy J. Marshall 2,3 and Monika Pfunder 4Genome-Wide Loss of Diversity in the Critically Endangered Hawaiian Monk SealDiversityJennifer Schultz
Lammers, Marc O., Pollyanna I. Fisher-Pool, Whitlow W.L. Au, Carl G. Meyer, Kevin B. Wong and Russell E. BrainardHumpback whale (Megaptera novaeangliae) wintering behavior in the Northwestern Hawaiian Islands observed acousticallyMarine Ecology Progress Series (MEPS)Marc Lammers
Lammers, Marc O.,Pollyanna Fisher-Pool, Whitlow Au and Carl Meyer.Cetacean occurrence observed acoustically at Rapture Reef, French Frigate ShoalsJournal of Marine BiologyMarc Lammers
Au, WhitBasis of acoustic discrimination of Chinook salmon from other salmons by echolocating /Orcinus orca/Journal of the Acoustical Society of AmericaWhitlow Au
Daniel Wagner, Mercer R. Brugler, Dennis M. Opresko, Scott C. France, Anthony D. Montgomery and Robert J. Toonen (in press).Using morphometrics, in situ observations and genetic characters to distinguish amongst commercially valuable Hawaiian black coral species; a redescription of Antipathes grandis Verrill, 1928 (Antipatharia: Antipathidae)Invertebrate SystematicsToonen, Robert
Gaither, Michelle R.1*, Zoltán Szabó1, Marc Crepeau2, Christopher Bird1, Robert Toonen1Preservation of corals in salt-saturated DMSO buffer is superior to ethanol for PCR experimentsCoral ReefsToonen, Robert
Wagner, Daniel, Yannis P. Papastamatiou, Randall K. Kosaki, Kelly A. Gleason, Greg B. McFall, Raymond C. Boland, Richard L. Pyle & Robert J. Toonen (in press).New records of commercially valuable black corals (Cnidaria: Antipatharia) from the Northwestern Hawaiian Islands at mesophotic depthsPacific ScienceToonen, Robert
Pacini, A.F., Nachtigall, P.E., Kloepper, L.N., Linnenschmidt, M., Sogorb, A. and Matias, S.Audiogram of a formerly stranded long-finned pilot whale (Globicephala melas) measured using auditory evoked potentialsJournal of Experimental BiologyNachtigall, Paul
Jacqueline L. Padilla-Gamiño, Tina M. Weatherby, Rhian G. Waller and Ruth D. GatesFormation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capitataCoral ReefsGates, Ruth
Kloepper, L.N., Nachtigall, P.E. and Breese, M. 2010.Change in echolocation click parameters with hearing loss in a false killer whale (Pseudorca crassidens)Journal of the Acoustical Society of America 128(4)Paul Nachtigall
Toonen, R.J. & R.K. Grosberg (2011).Testing hypotheses for chaotic genetic structure: patterns of spatial and temporal genetic heterogeneity among recruits, subadults and adults of the intertidal anomuran Petrolisthes cinctipesPhylogeography and Population Genetics in CrustaceaToonen, Robert
Stimpert, A.K., Au, W.W.L., Wiley, D.N., Hurst, T.N.Accepted. Common humpback whale (Megaptera novaeangliae) sound types for passive acoustic monitoringJournal of the Acoustical Society of AmericaAu, Whitlow
Apprill A, Mooney TA, Lyman E, Stimpert AK, Rappé MS (2010Humpback whales harbour a combination of specific and variable skin bacteriaEnvironmental Microbiology ReportsRappe, Mike
ZAC H. FORSMAN1,3, JONATHAN A. MARTINEZ1, JIM E. MARAGOS2, & ROBERT J. TOONEN1Resurrection of Porites hawaiiensis Vaughan, 1907: a Hawaiian coral obscured by small size, cryptic habitat, and confused taxonomy,ZootaxaToonen, Robert
Bowen, Brian, DiBattista, Joseph, Feldheim, Kevin A.Microsatellite DNA markers to resolve population structure and hybridization of two-closely related surgeonfish species Acunthurus nigricans & Acanthurus leucosternoConservation Genetic ResourcesBowen, Brian
Karl SA, Castro ALF, Lopez JA, Charvert-Almeida P, Burgess GH.Phylogeography of the bull shark (Carcharhinus leucas) inferred from mitochondrial and microsatellite DNAConservation GeneticsKarl, Stephen
Adam Dewan, Maya Ramey, Tim TricasArginine vasotocin neuronal phenotypes, telencephalic fiber varicosities, and social behavior in butterflyfishes (Chaetodontidae): Potential similarities to birds and mammalsHormones & BehaviorTricas, Tim
Tim Tricas, Kelly BoylePulse sound generation, anterior swim bladder buckling, and associated muscle activity in the pyramid butterflyfish, Hemitaurichthys polylepisJournal of Experimental BiologyTricas, Tim
Daniel Wagner, Xavier Pochon, Leslie Irwin, Robert J. Toonen & Ruth D. GatesAzooxanthellate? Most Hawaiian black corals contain SymbiodiumProceedings of the Royal Society BToonen, Robert
Anderson B. Mayfield, Yi-Yuong Hsiao, Tung-Yung Fan, Chii-Shiarng Chen, Ruth D. GatesEvaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seriatopora hystrixJournal of Experimental Marine Biology and EcologyGates, Ruth
P. E. Nachtigall, R. Gisiner and M. Breese.Decreased echolocation performance following high-frequency hearing loss in the false killer whale (Pseudorca crassidens)Journal of Experimental BiologyNachtigall, Paul
DiBattista, Joseph D., Feldheim, Kevin A.Isolation and characterization of eight microsatellite loci in Chaetodon ornatissiumus and cross-amplification in a sympatric sister series, Chaetodon meyeriConservation Genetics ResourcesBowen, Brian
Malia Rivera, Kim Andrews, Donald Kobayashi, Johanna Wren, C. Kelly, G. K. Roderick & Robert J. ToonenGenetic analyses and simulations of larval dispersal reveal distinct populations and directional connectivity across the range of the Hawaiian Grouper (Epinephelus quernus)Journal of Marine BiologyRivera, Malia
Michael Stat & Ruth D. GatesClade D Symbiodinium in seleractinian corals: a nugget of hope, a selfish of opportunist, an ominous sign, or all of the above?Journal of Marine BiologyGates, Ruth
Jennifer K. Schultz1, Joseph M. O’Malley1, Elizabeth E. Kehn2, Jeffrey J. Polovina3, Frank A. Parrish3, Randall K. Kosaki2Tempering expectations of recovery for previously exploited populations in a fully protected marine reserveJournal of Marine Biology (Special Issue on Ecosystem Management of Pacific Islands)Schultz, Jennifer
Jennifer K. Schultz*, Jason D Baker, Robert J. Toonen, Albert L. Harting, Brian W. BowenRange-wide genetic connectivity of the Hawaiian monk seal and implications for translocationConservation BiologySchultz, Jennifer
Jennifer Salerno, Dan Reineman, Ruth D. Gates and Michael RappeThe effect of a sub-lethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressaJournal of Marine BiologyRappe/Gates
Jennifer K. Schultz*, Brenda L. Becker, Thea C. Johanos, Jessica U. Lopez, and Lizabeth KashinskyDyzygotic twinning in the Hawaiian monk sealJournal of MammalogySchultz, Jennifer
Joseph DiBattista, Christie Wilcox, Matthew T. Craig, Luiz A. Rocha and Brian W. BowenPhylogeography of the Bluelined Surgeonfish, Acanthurus nigroris, reveals high connectivity and a cryptic endemic species in the Hawaiian ArchipelagoJournal of Marine BiologyBrian Bowen
Gorospe KD, Karl SASmall-scale spatial analysis of in situ sea temperature throughout a single coral patch reefJournal of Marine BiologySteve Karl
Z.H.Forsman 1*, G.T.Concepcion 2, R.D.Haverkort 1, R.W.Shaw 3, J.E.Maragos 4, and R.J.Toonen 1Ecomorph or Endangered Coral? DNA and Microstructure Reveal Hawaiian Species Complexes: Montipora dilatata/flabellata/turgescensPLoS OneRob Toonen
ZOLTÁN SZABÓ , BETHANY K. KIMOKEO, ROBERT J. TOONEN & JOHN E. RANDALLOn the status of the Hawaiian seahorses Hippocampus hilonis, HMarine Biology ResearchRob Toonen
Derek J. Skillings, Christopher E. Bird and Robert J. ToonenGateways to Hawai'i: genetic population structure of the tropical sea cucumber Holothuria atraJournal of Marine BiologyRob Toonen
Robert J. Toonen, Kimberly R. Andrews, Iliana B. Baums, Christopher E. Bird, Gregory T. Concepcion, Toby S. Daly-Engel, Jeff A. Eble, Anuschka Faucci, Michelle R. Gaither, Matthew Iacchei, Jonathan B. Puritz, Jennifer K. Schultz, Derek J. Skillings, Molly Timmers, & Brian W. Bowen (accepted)Defining boundaries for ecosystem-based management: A multispecies case study of marine connectivity across the Hawaiian ArchipelagoJournal of Marine BiologyRob Toonen
Badgley, BD, THomas, FIM and Harwood, VJQuantifying environmental reservoirs of fecal indicator bacteria associated with sediment and submerged aquatic vegetationEnvironmental Microbiology andFlo Thomas
Ariel C. Rivera-Vicente, Josiah Sewell and Timothy C. TricasElectrosensitive Spatial Vectors in Elasmobranch Fishes: Implications for Source LocalizationPublic Library of Science OneTimothy Tricas
Baranets, V, Forsman Z, Karl S.Microsatellite loci for the plate-and-pillar coral, Porites rusConservation Genetics ResourcesSteve Karl
Michael Stat, Christopher E. Bird, Xavier Pochon, Luis Chasqui, Leonard J. Chauka, Gregory T. Concepcion, Dan Logan, Misaki Takabayashi, Robert J. Toonen, Ruth D. GatesVariation in Symbiodinium ITS2 sequence assemblages among coral coloniesPLoS OneR. Toonen, R. Gates
John E Randall,1 Joseph D. DiBattista,2 and Christie Wilcox2Acanthurus nigros Günther, a valid species of surgeonfish, distinct from the Hawaiian A. nigroris ValenciennesPacific ScienceBrian Bowen
Karen Maruska and Timothy C. TricasGonadotropin-Releasing Hormone (GnRH) Modulates Auditory Processing in the Fish BrainHormones and BehaviorTimothy Tricas
Apprill, A and Rappe, MS.Response of the microbial community to coral spawning in lagoon and reef flat environments of Hawaii, USAAquatic Microbial EcologyMike Rappe
Hédouin, L., Metian M and Gates RDEcotoxicological approach for assessing the contamination of a Hawaiian coral reefecosystem (Honolua Bay, Maui) by metals and a metalloidMarine Environmental ResearchRuth Gates
Adam Kabir Dewan and Timothy C. TricasArginine vasotocin neuronal phenotypes and their relationship to aggressive behavior in the territorial monogamous multiband butterflyfish, Chaetodon multicinctusBrain ResearchTim Tricas
Jonathan B. Puritz and Robert J. ToonenCoastal Pollution Limits Pelagic Larval DispersalNature CommunicationsRob Toonen
Eble, J.A., L.S. Sorenson, Y.P. Papastamatiou, L. Basch, R.J. Toonen, B.W. Bowen (in press)Escaping paradise: Larval export from Hawaii in an Indo-Pacific reef fish, the Yellow TangMarine Ecology Progress SeriesBrian Bowen
Christopher E. Bird*, Brenden S. Holland, Brian W. Bowen, and Robert J. ToonenDiversification of sympatric broadcast-spawning limpets (Cellana spp.) within the Hawaiian archipelagoMolecular EcologyBrian Bowen and Rob Toonen
Julie N. Oswald, W. W. L. Au and F. DunnebeirMinke whale (Balaenoptera acutorostrata) boings detected at the Station Aloha Cabled ObservatoryJournal of the Acoustical Society of AmericaWhitlow Au
Takabayashi M, Adams LM, Pochon X, Gates RDDiversity of Free-Living Symbiodinium in surface water and sediment of Hawaii and FloridaCoral ReefsRuth Gates
Adam K. Dewan and Timothy C. TricasCytoarchitecture of the telencephalon in the coral reef multiband butterflyfish (Chaetodon multicinctus)The Journal of Comparitive NeurologyTim Tricas
Adam K. Dewan and Timothy C. TricasCytoarchitecture of the diencephalon in the coral reef multiband butterflyfish (Chaetodon multicinctus)The Journal of Comparitive NeurologyTim Tricas
Daniel Wagner, Rhian G. Waller and Robert J. ToonenSexual reprorduction of Hawaiian black corals, with a review of reproductive processes within the order Antipatharia (Cnidaria: Anthozoa: Hexacorallia)Invertebrate BiologyRob Toonen
Edmunds PJ, Putnam HM, Nisbet RM, and Muller EBBenchmarks in organism performance and their use in comparative analysesOecologiaRuth Gates
Grottoli AG, Rodrigues LJ (2011)Bleached Porites compressa and Montipora capitata corals catabolize 13C-enriched lipidsCoral ReefsPaul Jokiel
O'Malley, J.M.Spatiotemporal Variation in the Population Ecology of Scaly Slipper Lobsters Scyllarides squammosus in the Northwestern Hawaiian IslandsMarine BiologyRobert Toonen
Adam K. Dewan and Timothy C. TricasArginine vasotocin neuronal phenotypes and their relationship to aggressive behavior in the territorial monogamous multiband butterflyfish, Chaetodon multicinctusBrain ResearchTim Tricas
Gates, RD, Ainsworth, TDThe nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian coralsJournal of Experimental Marine Biology and EcologyRuth Gates
Bird, ChristopherMorphological and Behavioral Evidence for Adaptive Diversification of Sympatric Hawaiian Limpets (Cellana spp.)Integrative and Comparative BiologyRob Toonen
Christopher E. Bird, Robert J. Toonen, Stephen E. Karl , Peter E. SmouseDetecting and Measuring Genetic DifferentiationCrustacean Issues: Phylogeography and Population Genetics in CrustaceaRob Toonen
Jennifer SchultzPopulation Genetics of the Monk Seals (Genus Monachus): a ReviewAquatic MammalsJennifer Schultz
Aude F. Pacini, Paul E. Nachtigall, Christopher T. Quintos, T. David
Schofield, Dera A. Look, Gregg A. DVM Levine, and Jason P. Turner
Audiogram of a stranded Blainville's beaked whale (Mesoplodon densirostris) measured using auditory evoked potentialsJournal of Experimental BiologyPaul Nachtigall
Songhai Li, Paul E. Nachtigall and Marlee Breese.Dolphin hearing during echolocation: evoked potential responses in an Atlantic bottlenose dolphinJournal of Experimental BiologyPaul Nachtigall
Michelle R. Gaither, Brian W. Bowen, Tiana-Rae Bordenave, Luiz A. Rocha, Stephen J. Newman, Juan Arango Gomez, Lynne van Herwerden, and Matthew T. CraigPhylogeography of the reef fish Cephalopholus argus (Epinephelidae) indicates Pleistocene isolation across the Indo-Pacific Barrier with contemporary overlap in the Coral TriangleBMC Evolutionary BiologyBrian Bowen
Eiler, Alexander, D. H. Hayakawa, and M. S. RappeNon-random assembly of bacterioplankton communities in the subtropical North Pacific OceanFrontiers in Aquatic MicrobiologyMike Rappe
Curtis, C., B.S. Stewart, and S.A. KarlGenetically effective population sizes of Antarctic seals estimated from nuclear genesConservation GeneticsSteve Karl
Daley-Engel TS, Randall JE and Bowen BWIs the great barracuda (Sphyraena barracuda) a reef fish or pelagic fish?Marine BiologyBrian Bowen
Work TM, Forsman ZH, Szabo Z, Lewis TD, Aeby GS, Toonen RJMontiporiasis, a tissue-loss disease of Montipora capitata (Cnidaria; Scleractinia) consistent with interspecific chimerism and somatic cell parasitism.PLoS OneForsman, Zac
Supin, A.Ya., Nachtigall, P.E. and Breese, M.Interaction of emitted sonar pulses and simulated echoes in a false killer whale: An evoked-potential studyJournal of the Acoustical Society of AmericaNachtigall, Paul
Kuulei S. Rodgers, Michael H. Kido, Paul L. Jokiel, Tim Edmonds, Eric K. BrownUse of integrated landscape indicators to evaluate the health of linked watersheds and coral reef environments in the Hawaiian IslandsEnvironmental ManagementRodger, Kuulei
M.C. Ross, Y.Stender, D. White, G.S. AebyOutbreak of the coral disease, Montipora White Syndrome in Maui, HawaiiCoral ReefsAeby, GS
Grote, J., C. Bayindirli, K. Bergauer, P. Carpintero de Moraes, H. Chen, L. D'Ambrosio, B. Edwards, B. Fernández-Gómez, M. Hamisi, R. Logares, D. Nguyen, Y. M. Rii, E. Saeck, C. Schutte, B. Widner, M. J. Church, G. F. Steward, D. M. Karl, E. F. DeLong, J. M. Eppley, S. Schuster, N. C. Kyrpides, and M. S. RappéComplete genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine AlphaproteobacteriaStandards in Genomic SciencesRappe, Michael
Erik C. Franklin, Michael Stat, Xavier Pochon, Hollie M. Putnam, Ruth D. GatesRapid development of a hybrid web application for synthesis science of Symbiodinium with Google AppsProceedings of Environment Information Management 2011 ConferenceFranklin, Erik
FORSMAN, Z.H., KIMOKEO, B.K., BIRD, C.E., HUNTER, C.L. & TOONEN, R.J.Coral farming: species specific effects of light, water motion and artificial foodsJournal of the Marine Biological AssnForsman, Zac
Randall, J.E., J.D. DiBattistaEtrumeus makiawa, a new species of Round Herring (Clupeidae: Dussumierinae) from the Hawaiian IslandsPacific ScienceBowen, Brian
Selkoe, K.A. & R.J. ToonenReview: Marine Connectivity: a new look at pelagic larval duration and genetic metrics of dispersalMarine Ecology Progress SeriesToonen, Rob
Lisa M. Munger, Marc O. Lammers, Pollyanna Fisher-Pool, and Kevin WongHumpback whale (Megaptera novaeangliae) song occurrence at American Samoa in long-term passive acoustic recordings, 2008-09Endangered Species ResearchLammers, Marc
Hughes A.D., Grottoli A. G.Critical importance of heterotrophy in bleached corals throughout long-term recoveryNatureJokiel, Paul
Franklin EC, Stat M, Pochon X, Putnam HM, Gates RDGeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbiosesMolecular Ecology ResourcesFranklin, Erik
Megan J. Huggett, Darin H. Hayakawa and Michael S. Rappé.Permanent draft genome sequence of strain HIMB624, a cultured representative from the OM43 clade of marine BetaproteobacteriaStandards in Genomic SciencesRappe, Michael
M(ichael). S. Wollenberg and E(dward). G. RubyPhylogeny and fitness of Vibrio fischeri from the light organs of Euprymna scolopes in two Oahu, Hawaii populationsISME JournalGates, Ruth
D. W. Lemonds, L. N. Kloepper, P. E. Nachtigall, W. W. L. Au and S. A. Vlachos, and B. K. BranstetterA re-evaluation of auditory filter shape in delphinid odontocetes: Evidence of constant-bandwidth filtersJournal of the Acoustical Society of AmericaNachtigall, Paul
Karl, SA, Castro ALF, and Garla RCPopulation genetics of the nurse shark (Ginglymostoma cirratum) in the western AtlanticMarine BiologyKarl, Steve
Kelly S. Boyle & Timothy C. TricasSound production in the longnose butterflyfishes (genus Forcipiger): cranial kinematics, muscle activity and honest signalsJournal of Experimental BiologyTricas, Timothy
Nicholas M. Whitney, William D. Robbins, Jennifer K. Schultz, Brian W. Bowen and Kim N. HollandOceanic dispersal in a sedentary reef shark (Triaenodon obesus): genetic evidence for extensive connectivity without a pelagic larval stageJournal of BiogeographyBowen, Brian
Whitlow W. L. Au, Brian Branstetter, Patrick W. Moore and James J. FinneranThe biosonar field around an Atlantic bottlenose dolphin (Tursiops truncatus)Journal of the Acoustical Society of AmericaAu, Whitow
O'Malley, J.M., J.C. Drazen, B.N. Popp, E. Grier, and R.J. ToonenSpatial Variability in Growth and Prey Availability of Lobsters in the Northwestern Hawaiian IslandsMarine Ecology Progress SeriesToonen, Rob
Kloepper, L.N., Nachtigall, P.E., Quintos, C., and Vlachos, S.A.Single-lobed frequency-dependent beam shape in an echolocating false killer whale (Pseudorca crassidens)Journal of the Acoustical Society of AmericaNachtigall, Paul
Schnitzler, Christine., Lea L. Hollingsworth, David A. Krupp and Virginia M. WeisElevated temperature impairs onset of symbiosis and reduces survivorship in larvae of the Hawaiian coral, Fungia scutariaMarine BiologyKrupp, Dave
Gaither, Michelle, Jones, Shelley, Kelley, Christopher, Newman, Stephen, Sorenson, Laurie, Bowen, BrianHigh connectivity in the deepwater snapper Pristipomoides filamentosus (Lutjanidae) across the Indo-Pacific with isolation of the Hawaiian ArchipelagoPLoS OneBowen, Brian
Gates, RD, Padilla-Gamino, JacquelineSpawning dynamics in the Hawaiian reef building coral Montipora capitataMarine Ecology Progress SeriesGates, Ruth
Thomas Krueger and Ruth D. GatesCultivating endosymbionts - Host environmental mimics support the survival of Symbiodinium C15 ex hospiteJournal of Experimental Marine Biology and EcologyGates, Ruth
Xavier Pochon, Hollie Putnam, Fabien Burki, and Ruth Gates.Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus SymbiodiniumPLoS OneGates, Ruth
Songhai Li, Paul E. Nachtigall, Marlee Breese, and Alexander Ya. SupinHearing sensation level of emitted biosonar clicks in an echolocating Atlantic bottlenose dolphinPLoS OneNachtigall, Paul
Mary Hagedorn, Virginia Carter, Kelly Martorana, Malia K. Paresa, Jason Acker, Iliana B. Baums, Eric Borneman, Michael Brittsan, Michael Byers, Michael Henley, Michael Laterveer, Jo-Ann Leong, Megan McCarthy, Stuart Meyers, Brian D. Nelson, Dirk Petersen, Terrence Tiersch, Rafael Cuevas Uribe, Erik Woods and David WildtPreserving and Using Germplasm and Dissociated Embryonic Cells for Conserving Caribbean and Pacific CoralPLoS OneHagedorn, Mary
Robert van Woesik, Erik C. Franklin, Jennifer O’Leary, Tim R. McClanahan, James S. Klause, Ann F. BuddHosts of the Plio-Pleistocene past reflect modern-day coral vulnerabilityProceedings of the Royal Society B: Biological SciencesFranklin, Erik
D. Wagner, R.G. Waller, A.D. Montgomery, C.D. Kelley and R.J. ToonenSexual reproduction of the Hawaiian black coral Antipathes griggi (Cnidaria: Antipatharia)Coral ReefsToonen, Rob
Karl, SA, Toonen RJ, Grant WS, and Bowen BWCommon misconceptions in molecular ecology: Is it time for a new modern synthesis?Molecular EcologyKarl, Steve
Whitlow W. L. Au and Stephen W. MartinWhy dolphin biosonar performs so well in-spite of mediocre “equipment”Sonar, Radar and NavigationAu, Whitlow
Laura N. Kloepper, Paul E. Nachtigall, Megan J. Donahue and Marlee Breese.Active echolocation beam focusing in the false killer whale, Pseudorca crassidens (2011)Journal of Experimental BiologyNachtigall, Paul
Jonathan B. Puritz, Jason A. Addison, and Robert J. ToonenNext-Generation Phylogeography: A targeted approach for multilocus sequencing of non-model organismsPLoS OneToonen, Rob
Karl, SA and Hayes KA.Extreme population subdivision in the Crown ConchJournal of HeredityKarl, Steve
M. Hagedorn, M. McCarthy, V.L Carter, S.A. MeyersOxidative Stress in Zebrafish (Danio rerio) SpermPLoS OneHagedorn, Mary
Christopher E. Bird1, Iria Fernandez-Silva, Derek J. Skillings, Robert J. ToonenSympatric speciation in the post “Modern Synthesis” era of evolutionary biologyEvolutionary BiologyToonen, Rob
DiBattista, Joseph, Ellen Waldrop, Brian Bowen, Jenny Schultz, Michelle Gaither, Richard Pyle and Luiz A. Rocha.Twisted sister species of Pygmy Angelfishes: Discordance between taxonomy, coloration, and phylogeneticsCoral ReefsBowen, Brian
DiBattista, John E. Randall, Brian W. BowenReview of the round herrings of the genus Etrumeus (Clupeidae: Dussumieriinae) of Africa, with descriptions of two new speciesCybiumBowen, Brian
Wainwright BJ, Arlyza IS, and Karl SA.Eighteen microsatellite loci for the Crown-of-Thorns starfish, Acanthaster planciConservation Genetics ResourcesKarl, Steve
Wainwright BJ, Arlyza IS, and Karl SA (2012)Development of 15 microsatellite loci for Protoreaster nodosus (Echinodermata Asteroidea)Conservation Genetic ResourcesKarl, Steve
Jacqueline L. Padilla-Gamino, Xavier Pochon, Chris E. Bird, Greg T. Concepcion and Ruth D. Gates.From parent to gamete: Vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitataPLoS OneGates, Ruth
Wainwright BJ, Arlyza IS, and Karl SADevelopment of eighteen polymorphic microsatellite loci for the banded coral shrimp, Stenopus hisipidusConservation Genetics ResourcesKarl, Steve
Paul L. Jokiel, Ku‘ulei S. Rodgers, Stephen A. KarlGenetic structure of a reef coral population (Porites rus): comparison of grafting vs. a molecular genetic techniqueMarine Ecological Progress SeriesRodgers, Ku'ulei
Michael Stat, Andrew C. Baker, David G. Bourne, Adrienne M. S. Correa, Zac Forsman, Megan Huggett, Xavier Pochon, Derek Skillings, Rob Toonen, Madeleine J.H. van Oppen and Ruth D. GatesMolecular Delineation of Species in the Coral HolobiontAdvances in Marine BiologyGates, Ruth
Wainwright BJ, Arlyza IS, Karl SA.Isolation and characterization of nineteen microsatellite loci for the collector sea urchin, Tripneustes gratillaConservation Genetics ResourcesKarl, Steve
Whitlow W. L. Au, Brain Branstetter, Patrick Moore and James Finneran.Dolphin biosonar signals measured at extreme off-axis angles: Insights to sound propagation in the headJournal of the Acoustical Society of AmericaAu, Whitlow
Gaither, Michelle R., Randall, John E.Reclassification of the Indo-Pacific Hawkfish Cirrhitus pinnulatus (Forster.)Smithiana BulletinBowen, Brian
Lemond, D., Au, W. W. L., Vlachos, S., and Nachtigall, P.High-frequency auditory filter shape for the Atlantic bottlenose dolphinJournal of the Acoustical Society of AmericaAu, Whitlow
Jungbluth, S. P., J. Grote, H.-T. Lin, J. P. Cowen, and M. S. Rappé (2012)Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flankISME JournalRappe, Mike
Jonathan B. Puritz, Carson C. Keever, Jason A. Addison, Maria Byrne, Michael W. Hart, Richard K. Grosberg and Robert J. ToonenExtraordinarily rapid life history divergence between Cryptasterina sea star speciesProceedings of the Royal Society B: Biological SciencesToonen, Rob
Michelle R. Gaither (corresponding author), Robert J. Toonen, Brian W. BowenComing out of the starting blocks: Extended lag time rearranges genetic diversity in introduced marine fishes of Hawaiʻi.Proceedings of the Royal Society of LondonBowen, Brian
A. Ya Supin, Paul E. Nachtigall and Marlee BreeseA whale better adjusts the biosonar to ordered rather than to random changes in the echo parametersJournal of the Acoustical Society of AmericaNachtigall, Paul
Joseph D. DiBattista, Luiz A. Rocha, Matthew T. Craig, Kevin A. Feldheim, Brian W. Bowen.Phylogeography of Two Closely Related Indo-Pacific Butterflyfishes Reveals Divergent Evolutionary Histories and Discordant Results from mtDNA and MicrosatellitesJournal of HeredityBowen, Brian
Weitzman, JS1*, Aveni-Deforge, K2, Koseff, JR1, and Thomas, FIM2Uptake of dissolved inorganic nitrogen by shallow seagrass communities 1 exposed to wave-driven unsteady flowMarine Ecology Progress SeriesThomas, Flo
Hui Ou, Whitlow Au and Julie OswaldA non-spectrogram-correlation method of automatically detecting minke whale boingsJournal of the Acoustical Society of AmericaAu, Whitlow
Fabina NS, Putnam HM, Stat M, Franklin EC, and Gates RDTransmission mode predicts specificity and interaction patterns in coral-Symbiodinium communitiesPLoS OneGates, Ruth
Putnam HM, Stat M, Pochon X and Gates RDEndosymbiotic flexibility associates with environmental sensitivity in scleractinian coralsProceedings of the Royal Society London BGates, Ruth
Jacqueline L. Padilla-Gamiño, Katharine M. Hanson, Michael Stat and Ruth D. GatesPhenotypic plasticity of the coral Porites rus: acclimatization responses to a turbid environmentJournal of Experimental Marine Biology and EcologyGates, Ruth
Apprill, A., H. Q. Marlow, M. Q. Martindale, and M. S. RappéThe specificity of associations between bacteria and the coral Pocillopora meandrina during early developmentApplied and Environmental MicrobiologyRappe, Mike
Wainwright, BJ, Arlyza IS, Karl SAIsolation and characterization of twenty-three polymorphic microsatellite loci for Linckia laevigataConservation Genetics ResourcesKarl, Steve
Michelle R. Gaither1,2 and John E. Randall3On the validity of the cirrhitid fish genus ItycirrhitusAqua, International Journal of IchthyologyBowen, Brian
Mary Hagedorn1,2*, Ann Farrell1,2 and Virginia L. Carter1,2Cryobiology of Coral FragmentsCryobiologyHagedorn, Mary
Edmunds, P. J., Putnam, H. M., and Gates, R. D.Photophysiological consequences of vertical stratification of Symbiodinium in tissue of the coral Porites luteBiological BulletinGates, Ruth
Jacqueline L. Padilla-Gamino, Robert R. Bidigare, Daniel J. Barshis, Ada Alamaru, Laetitia Hedouin, Xavier Hernandez-Pech, Frederique Kandel, Sherril Leon Soon, Melissa S. Roth, Lisa J. Rodrigues, Andrea A. Grottoli, Claudia Portocarrero, Stephanie A. Wagenhauser, Fenina Buttler, Ruth D. GatesAre all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitataCoral ReefsGates, Ruth
Puritz JB & RJ ToonenNext-generation sequencing for high-throughput molecular ecology: a step-by-step protocol for targeted multilocus genotyping by pyrosequencingMethods in Molecular BiologyToonen, Rob
Fernandez-Silva I & RJ ToonenLess is more: Optimizing selection of microsatellite loci from 454 pyrosequencing via post-sequencing bioinformatic analysesMethods in Molecular BiologyToonen, Rob
Alison K. Stimpert, David Mattila, Eva-Marie Nosal, Whitlow W. L. AuTagging young humpback whale calves: methodology and diving behaviorEndangered Species ResearchAu, Whitlow
Mary Hagedorn, Ann Farrell, Virginia Carter, Nikolas Zuchowicz, Erika Johnston, Jacqueline Padilla- Gamiño, Jo-Ann LeongDo Toxins in Montipora capitata Eggs and Larvae Aid in Competition?PLoS OneHagedorn, Mary
AB Mayfield, P-H Chan, HM Putnam, C-S Chen and T-Y FanThe effects of a variable temperature regime on the physiology of the reef-building coral Seriatopora hystrix: results from a laboratory-based reciprocal transplantJournal of Experimental BiologyGates, Ruth
Kelly S. Boyle, Adam K. Dewan, and Timothy C. TricasFast Drum Strokes: Novel and Convergent Features ofSonic Muscle Ultrastructure, Innervation, and Motor Neuron Organization in the Pyramid Butterflyfish (Hemitaurichthys polylepis)Journal of MorphologyTricas, Tim
Wainwright, BJ, Arlyza IS, Karl SAIsolation and characterization of twenty-six, polymorphic microsatellite loci for the tropical sea urchin, Colobocentrotus atratusConservation Genetic ResourcesKarl, Steve
Andrews, Kimberly R.; Perrin, William F.; Oremus, Marc; Karczmarski, Leszek; Bowen, Brian W.; Puritz, Jonathan B.; Toonen, Robert JThe evolving male: Spinner dolphin (Stenella longirostris) ecotypes are divergent at Y chromosome but not mtDNA or autosomal markersMolecular EcologyBowen, Brian
Hédouin, L and Gates RDAssessing fertilization success of the coral Montipora capitata under copper exposure: does the night of spawning matterMarine Pollution BulletinGates, Ruth
Halpern BS, Selkoe KA, White C, Albert S, Aswani S and Lauer MMarine protected areas and resilience to sedimentation in the Solomon IslandsCoral ReefsToonen, Rob
Joseph D. DiBattista1*, Michael L. Berumen2,3, Michelle R. Gaither4, Luiz A. Rocha4, Jeff A. Eble5, J. Howard Choat6, Matthew T. Craig7, Derek J. Skillings1 and Brian W. Bowen1After continents divide: Comparative phylogeography of reef fishes from the Red Sea and Indian OceanJournal of BiogeographyBowen, Brian
Putnam HM, Mayfield AB, Fan TY, CS Chen and RD GatesThe physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperature and pCO2Marine BiologyGates, Ruth
Franklin EC, Jokiel PL, Donahue MJ.Predictive modeling of coral distribution and abundance in the Hawaiian IslandsMarine Ecology Progress SeriesJokiel, Paul
John E. Randall1 and Joseph D. DiBattista2Chromis fieldi, a new species of damselfish (Pomacentridae) from the Indian OceanAqua, International Journal of IchthyologyBowen, Brian
Briggs, J.C., B.W. Bowen.Evolutionary patterns: Marine shelf habitatJournal of BiogeographyBowen, Brian
I. Fernandez-Silva, B. N. Snelgrove, B. W. BowenTwelve microsatellite DNA markers to resolve population structure of the Yellow-Striped Goatfish Mulloidichthys flavolineatus (family Mullidae)Conservation Genetics ResourcesBowen, Brian
Weitzman, j, Aveni-deForge, Koseff, J and F.I.M. ThomasUptake if dissolved inorganic nitrogen by shallow Seagrass communitities under non steady flowMarine Ecology Progress SeriesThomas, Flo
Fernandez-Silva I., Whitney J., Wainwright B., Andrews K. R., Ylitalo-Ward H., Bowen B. W., Toonen R. J., Goetze E., Karl S. A.Microsatellites for next-generation ecologists: A post-sequencing bioinformatics pipelinePLoS OneToonen, Robert
Michelle R. Gaither, Greta Aeby, Matthias Vignon, Yu-ichiro Meguro, Mark Rigby, Christina Runyon, Robert J. Toonen, Chelsea L. Wood, Brian W. BowenAn invasive fish and the time-lagged spread of its parasite across the Hawaiian archipelagoPLoS OneToonen, Robert
Yuko Stender, Paul Jokiel, Ku‘ulei RodgersChanges in the Marine Biota of Pelekane Bay, Hawai‘i over Three DecadesPacific ScienceJokiel, Paul
Louise T. Kregting, Anna L. Bass, Òscar Guadayol,Philip O. Yund, Florence I. M. ThomasEffects of oscillatory flow on fertilization in the green sea urchin Strongylocentrotus droebachiensisLimnology and OceanographyThomas, Flo
Mary Hagedorn, Virginia Carter, Nikolas Zuchowicz, Micaiah Phillips, Elizabeth Vallen, Frederick W. Kleinhans, Kelly Peterson, Paul YanceyTrehalose Is a Chemical Attractant in the Establishment of Coral SymbiosisPLoS OneHagedorn, Mary
Wiener CS & Wagner DSailing through time: a historical examination of the explorations and investigations of the Papahānaumokuākea Marine National MonumentAtoll Research BulletinWeiner, Carlie
Wainwright B., I. Arlyza, S.A. KarlIsolation and characterization of twenty-one polymorphic microsatellite loci for Polycarpa aurata using third generation sequencingConservation Genetics ResourcesKarl, Steve
Bowen, B.W., L.A. Rocha, R.J. Toonen, S.A. Karl, J.A. Eble, D. Skillings, M.R. Gaither, J.D. DiBattista, M.T. Craig, C.E. Bird.Origins of tropical marine biodiversityTrend in Ecology and EvolutionBowen, Brian
Stat M, Pochon X, Franklin EC, Bruno JF, Casey KS, Selig ER, Gates RDThe distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stressEcology and EvolutionGates, Ruth
Matthew Iacchei, Tal Ben-Horin, Kim Selkoe, Chris Bird, Francisco Garcia Rodriguez, Rob ToonenCombined analyses of kinship and FST suggest potential drivers of chaotic genetic patchiness in high gene-flow populationsMolecular EcologyToonen, Robert
Whitlow Au, Giacomo Giorli, Jessica Chen, Adrienne Copeland, Marc Lammers, Michael Richlen, Susan Jarvis, Ronald Morrissey, David Moretti and Holger KlinckNighttime Foraging by Deep Diving Echolocating Odontocetes off the Hawaiian Islands of Kauai and Ni’iahu as Determined by Passive Acoustic MonitorsJournal of the Acoustical Society of AmericaAu, Whitlow
Gorospe, KD and Karl SA2013 Genetic Relatedness Does Not Retain Spatial Pattern Across Multiple Spatial Scales: Dispersal and Colonization in the Coral, Pocillopora damicornisMolecular EcologyKarl, Steve
Michelle R. Gaither, Brian W. Bowen and Robert J. ToonenPopulation structure in the native range predicts the spread of introduced marine speciesProceedings of the Royal Society B: Biological SciencesBowen, Brian
Stephen J. Levas, Andréa G. Grottoli, Adam Hughes, Christopher L. Osburn, and Yohei MatsuiPhysiological and biogeochemical traits of bleaching and recovery in the mounding species of coral Porites lobata: implications for resilience in mounding coralsPLoS OneJokiel, Paul
Ku’ulei S. Rodgers1, Paul L. Jokiel1, Eric K. Brown2, Skippy Hau3, and Russell Sparks3Hawai‘i Coral Reef Assessment and Monitoring Program: Over a Decade of Change in Spatial and Temporal Dynamics in Coral Reef CommunitiesPacific ScienceJokiel, Paul
Koi Lorance, Ku‘ulei S. Rodgers, and Paul L. JokielMonitoring of Coral Relocation from a Boat Channel to a South Kāne‘ohe Bay, O‘ahu, Hawai‘i Patch Reef over an Eight Year PeriodPacific ScienceJokiel, Paul
Baums, IB, LS Godwin, EC Franklin, DB Carlon & RJ ToonenDiscordant population expansions in four species of coral-associated, Pacific hermit crabs (Anomura: Diogenidae) linked to habitat availability resulting from sea level changeJournal of BiogeographyToonen, Robert
Wainwright B., I. Arlyza, S.A. KarlIsolation and characterization of eighteen polymorphic microsatellite loci for the topical seagrass, Syringodium isoetifoliumConservation Genetics ResourcesKarl, Steve
Wainwright B., I. Arlyza, S.A. KarlIsolation and characterization of twenty-four polymorphic microsatellite loci for the topical seagrass, Thalassia hemprichiiConservation Genetics ResourcesKarl, Steve
Paul E. Nachitigall, Alexander Ya. SupinA false killer whale reduces its hearing sensitivity when a loud sound is preceded by a warningThe Journal of Experimental BiologyNachtigall, Paul
Michael. P. Lesser, Michael. Stat and Ruth. D. GatesThe endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualistsCoral ReefsGates, Ruth
Nicholas S Fabina, Hollie M Putnam, Erik C Franklin, Michael Stat, and Ruth D GatesSymbiotic specificity, association patterns, and function determine community responses to global changes: Defining critical research areas for coral-Symbiodinium symbiosesGlobal Change BiologyGates, Ruth
Forsman ZH, Johnston EC, Brooks AJ, Adam TC, Toonen RJGenetic evidence for regional isolation of Pocillopora corals from MooreaOceanographyToonen, Robert
Helen, Ou, Whitlow Au, Sofie Van Parijs, Erin Oleson and Shannon RankinDiscrimination of frequency-modulated Baleen whale downsweep calls with overlapping frequenciesJournal of the Acoustical Society of AmericaAu, Whitlow
Denise M. Yost , Li-Hsueh Wang, Tung-Yung Fan, Chii-Shiarng Chen, Raymond W. Lee, Emilia Sogin and Ruth D. GatesDiversity in skeletal architecture influences biological heterogeneity and Symbiodinium habitat in coralsZoologyGates, Ruth
Christopher P. Jury, Florence I. M. Thomas, Marlin J. Atkinson, and Robert J. ToonenBuffer capacity, ecosystem feedbacks, and seawater chemistry under global changeWaterThomas, Flo
Carson C. Keever, Jonathan B. Puritz, Jason A. Addison, Maria Byrne, Richard K. Grosberg, Robert J. Toonen and Michael W. Hart(2013) Shallow gene pools in the high intertidal: extreme loss of genetic diversity in viviparous sea stars (Parvulastra)Biology LettersToonen, Robert
Louise T. Kregting, Anna L. Bass, Òscar Guadayol, Philip O. Yund, Florence I. M. ThomasEffects of oscillatory flow on fertilization in the green sea urchin Strongylocentrotus droebachiensisPLoS OneThomas, Flo
Patricia Marti-Puig, Zac H Forsman, Roxanne D Haverkort-Yeh, Ingrid SSKnapp, James E. Maragos, Robert J. ToonenExtreme phenotypic polymorphism in the coral genus Pocillopora; micro-morphology corresponds to mitochondrial groups, while colony morphology does notMarine ScienceToonen, Robert
Christopher E. Bird, Erik C. Franklin, Celia M. Smith and Robert J. ToonenBetween tide and wave marks: a unifying model of physical zonation on littoral shoresPeerJToonen, Robert
Briggs, RA, Padilla-Gamino, JL, Bidigare, RR, Gates, RD and Ruttenberg, KCImpact of coral spawning on the biogeochemistry of a Hawaiian reefEstuarine Coastal Shelf ScienceGates, Ruth
Iacchei, M. I., and R.J. ToonenCaverns, compressed air, and crustacean connectivity: insights into Hawaiian spiny lobster populationsProceedings of the Curaçao AAUS/ESDP Joint International Scientific Diving Symposium. Dauphin Island: American Academy of Underwater SciencesToonen, Robert
Marloes Poortvliet, Gary C. Longo, Kimberly Selkoe, Paul H. Barber, Crow White, Jennifer E. Caselle, Alejandro Perez-Matus, Steven D. Gaines & Giacomo BernardiPhylogeography of the California sheephead, Semicossyphus pulcher: the role of deep reefs as stepping stones and pathways to antitropicalityEcology and EvolutionToonen, Robert
Whitlow W. L. Au, Giacomo Giorli, Jessica Chen, Adrienne Copeland, Marc O. Lammers and Michael RichlenPresence and season variation of deep diving foraging odontocetes around Kauai, Hawaii using remote autonomous acoustic recordersJournal of the Acoustical Society of AmericaAu, Whitlow
Florence I. M. Thomas1*, Louise T. Kregting1,2, Brian D. Badgley3, Megan J. Donahue1, Philip O. Yund2FERTILIZATION IN A SEA URCHIN IS NOT ONLY A WATER COLUMN PROCESS: EFFECTS OF WATER FLOW ON FERTILIZATION NEAR A SPAWING FEMALEMarine Ecology Progress SeriesThomas, Flo
Jungbluth, S.P., Johnson, L.G.H., Cowen, J.P., and Rappé, M.SData report: microbial diversity in sediment near Grizzly Bare Seamount in Holes U1363B and U1363GProceedings of the Integrated Ocean Drilling ProgramRappe, Michael
Robert J. Toonen, Jonathan B. Puritz, Zac H. Forsman, Jonathan L. Whitney, Iria Fernandez-Silva, Kimberly R. Andrews and Christopher E. BirdezRAD: a simplified method for genomic genotyping in non-model organismsPeerJToonen, Robert
Justin Baumann, Andrea G. Grottoli, Adam D. Hughes, Yohei MatsuiThe acquisition and allocation of carbon to lipids of bleached and healthy Hawaiian coralsMEPS (Marine Ecology Progress Series)Gates, Ruth
Guadayol, Oscar, Silbiger, Nyssa, Donahue, Megan, Thomas, FloPatterns in temporal variability of temperature, oxygen and pH along an environmental gradient in a coral reefPLoS OneDonahue, Megan
Iacchei, M., J.M. O'Malley, R.J. ToonenAfter the gold rush: population structure of spiny lobsters in Hawai'i following a fishery closure and the implications for contemporary spatial managementBulletin of Marine ScienceToonen, Robert
Szabo Z, Snelgrove B, Craig MT, Rocha LA, Bowen, BW (2014)Phylogeography of the Manybar Goatfish, Parupeneus multifasciatus, reveals isolation of the Hawaiian Archipelago and a cryptic species in the Marquesas IslandsBulletin of Marine ScienceBowen, Brian
Concepcion GT, Baums IB & Toonen RJ (2014)Regional population structure of Montipora capitata across the Hawaiian ArchipelagoBulletin of Marine ScienceToonen, Robert
Michelle Gaither, Jennifer K. Schultz, David R. Bellwood, Richard L. Pyle, Joseph D. DiBattista, Luiz A. Rocha, Brian W. BowenEvolution of pygmy angelfishes: recent divergences, introgression, and the usefulness of color in taxonomyMolecular Phylogenetics and EvolutionBowen, Brian
Kaipo Perez III, Ku‘ulei S. Rodgers, Paul L. Jokiel, Claire LagerImpact of terrigenous sediment on larval survival and settlement in the reef coral Pocillopora damicornisPeer JRodgers, Ku'ulei
Franklyn Tan Te, Paul L. Jokiel, and Ku‘ulei S. RodgersResponses of The Hawaiian Reef Coral Montipora capitata To Sediment Loading under Laboratory ConditionsPeer JRodgers, Ku'ulei
Kimberly R. Andrews, Virginia N. Moriwake, Christie Wilcox, E. Gordon Grau, Christopher Kelley, Richard L. Pyle, Brian W. BowenPhylogeographic analyses of submesophotic snappers Etelis coruscans and Etelis marshi (family Lutjanidae) reveal concordant genetic structure across the Hawaiian ArchipelagoPLoS OneBowen, Brian
Jacqueline L. Padilla-Gamino, Laetitia Hédouin, Rhian G. Waller, Derek Smith, William Truong and Ruth D. GatesSedimentation and the reproductive biology of the Hawaiian reef building coral Montipora capitataBiological BulletinGates, Ruth
Kelly S. Boyle* Timothy C. Tricas (in press)Discrimination of mates and intruders: visual and olfactory cues for a monogamous territorial coral reef butterflyfishAnimal BehaviourTricas, Tim
Whit AuDolphin biosonar target detection in noise: A wrap up of an old experimentJournal of the Acoustical Society of AmericaAu, Whit
Flo ThomasEpifaunal community structure and ammonium uptake compared for the invasive algae, Gracilaria salicornia and Acanthophora specifera, and the native alga, Padina thivyiJournal of Experimental Marine Biology and EcologyThomas, Flo
Jokiel Paul L, Jury Christopher, Rodgers Ku’ulei SCoral-algae metabolism and diurnal changes in the CO2- carbonate system of bulk sea waterPeer JKu'ulei Rodgers
Emma M. Gibbin, Hollie M. Putnam, Simon K. Davy, and Ruth D. GatesIntracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cellsJournal of Experimental BiologyR. Gates
Xavier Pochon1, Hollie M. Putnam2 and Ruth D. Gates2Multi-gene analysis of Symbiodiniumdinoflagellates: a perspective on rarity,symbiosis, and evolutionPeerJRuth Gates
Peter J. Edmunds, Xavier Pochon, Don R. Levitan, Denise M. Yost, Mahdi Belcaid, Hollie M. Putnam, Ruth D. GatesLong-term changes in Symbiodinium communities in Orbicella annularis in St. John, US Virgin IslandsMarine Ecological Progress SeriesRuth Gates
Louise Kregting, Florence Thomas, Anna Bass, and Phil Yund.Relative Effects of Gamete Compatibility and Hydrodynamics on Fertilization in the Green Sea Urchin Strongylocentrotus droebachiensisThe Biological BulletinFlo Thomas
Comeau S, Carpenter RC, Nojiri Y, Putnam HM, Sakai K, and Edmunds PJ.Pacific-wide contrast highlights resistance of reef calcifiers to ocean acidificationProceedings of the Royal Society BHollie Putnam
Paul E. Nachtigall and Alexander Ya. SupinConditioned hearing sensitivity reduction in a bottlenose dolphin (tursiops truncatus)Journal of Experimental BiologyPaul Nachtigall
Wilcox, CL & MA Hixon (2014).False positive tests for ciguatera may derail efforts to control invasive lionfishEnvironmental Biology of FishesMark Hixon
Xavier Pochon, Ruth Gates, Dean Vik, Peter EdmundsMolecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Sorites orbiculus) and a scleractinian coral (Orbicella annularis) from St John, US Virgin IslandsMarine BiologyRuth Gates
Kimberly A. Peyton, Lauren M. Valentino, and Karen P. MaruskaDual roles of an algal farming damselfish as a cultivator and opportunistic browser of an invasive seaweedPLoS OneFlo Thomas/Rob Toonen
Nyssa J. Silbiger, Òscar Guadayol, Florence I.M. Thomas, and Megan J. DonahueReefs shift from net accretion to net erosion along a natural environmental gradientMarine Ecology Progress SeriesFlo Thomas
Timothy C. Tricas and Kelly S. BoyleAcoustic behaviors in Hawai’i coral reef fish communitiesMEPS (Marine Ecology Progress Series)Tim Tricas
Edmunds, PJ et alPersistence and change through reef corals through present, past and future climatesPLoS OneRuth Gates/Erik Franklin
Coleman Richard R, Gaither MR, Kimokeo B, Stanton F, Bowen BW, Toonen RJLarge-scale introduction of the Indo-Pacific damselfish Abudefduf viagiensis into Hawai‘i promotes genetic swamping of the endemic congener A. abdominalisMolecular EcologyBrian Bowen
Emilia M. Sogin, Paul Anderson, Philip Williams, Chii-Shiarng Chen, Ruth D. GatesApplication of 1H-NMR metabolomic profiling for reef-building coralsPLoS OneRuth Gates
Forsman ZH, Knapp ISS, Szabo Z, Toonen RJIntraspecific fluorescent phenotypes in Montipora capitataGalaxiaZac Forsman
Edmunds PJ, Burgess SC, Putnam HM, Baskett ML, Bramanti L, Fabina NS, Han X, Lesser MP,Madin JS, Wall CB, Yost DM, and Gates RDEvaluating the causal basis of ecological successHollie Putnam
Jessica Chen, Marc O. Lammers, Whitlow W.L. AuVariation in the songs of humpback whales (Megaptera novaeangliae) wintering in the Northwestern and Main Hawaiian IslandsJournal of the Acoustical Society of AmericaW. Au
Belcaid M, Toonen R.J.Demystifying Computer Science for Molecular EcologistsMolecular EcologyMahdi Belcaid
Belcaid M, Putnam H.M, Yost D.M., Schanzenbach D., and Poisson G., Gates R.D.SymTyper: A bioinformatic pipeline for the processing of Symbiodinium amplicon pyroseqencing dataMolecular Ecology ResourcesMahdi Belcaid
Silbiger, Nyssa and Megan Donahue.Secondary calcification and dissolution respond differently to future ocean conditionsBiogeosciences DiscussionMegan Donahue
Silvia Beurmann,Patrick Videau,Blake Ushijima,Ashley M. Smith,Greta S. Aeby,Sean M. Callahan,Mahdi BelcaidComplete Genome Sequence of Pseudoalteromonas sp. Strain OCN003,Isolated from Kane’ohe Bay, O’Ahu, HawaiiGenome AnnouncementsMahdi Belcaid
van Oppen MJH, Oliver JK, Putnam HM, and Gates RD.(2015) Building coral reef resilience through assisted evolutionProceedings of the National Academy of SciencesRuth Gates
Gibbin EM, Putnam HM, Gates RD, Nitschke MR, and Davy SK.Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef coralsMarine BiologyRuth Gates
Pochon X, Forsman ZH, Spalding HL, Padilla-Gamiño JL, Smith C, Gates RDDepth specialization in mesophotic corals (Leptoseris spp.) and associated algal symbionts in Hawai‘iRoyal Society Open ScienceRuth Gates
Melissa S. Roth, Jacqueline L. Padilla-Gamiño, Xavier Pochon, Robert R. Bidigare, Ruth D. Gates, Celia M. Smith, Heather L. SpaldingFluorescent proteins in dominant mesophotic reef-building coralsMarine Ecological Progress SeriesRuth Gates
Zac Forsman, Gerrard M. Wellington, George E. Fox, Robert J. ToonenClues to unraveling the coral species problem: distinguishing species from geographic variation in Porites across the Pacific with molecular markers and microskeletal traitsPeerJZac Forsman/Rob Toonen
Gorsope KD, Karl SADepth as an Organizing Force in Pocillopora damicornis: Intra-Reef Genetic ArchitecturePLoS OneSteve Karl
Gaither MR, Bernal MA, Coleman R, Bowen BW, Jones SA, Simison WB, Rocha LA.Genomic signatures of geographic isolation vs natural selection in coral reef fishesMolecular EcologyB. Bowen
Hui Ou, Whitlow W.L. AuDiscrimination of frequency-modulated Baleen whale downsweep calls with overlapping frequenciesJournal of the Acoustical Society of AmericaW. Au
Gorospe, KD, Donahue MJ, Karl SA (2015The importance of sampling design:spatial patterns and clonality in estimating the genetic diversity of coral reefsMarine BiologyS. Karl
Craig E. Nelsona, Megan J. Donahueb, Henrieta Dulaiovac, Stuart J. Goldberga, Florybeth F. La Valleb, Katie Lubarskyb, Justin Miyanob, Christina Richardsonc, Nyssa J. Silbigerb and Florence I.M. ThomasbFluorescent dissolved organic matter as a multivariate biogeochemical tracer of submarine groundwater discharge in coral reef ecosystemsMarine ChemistryM.Donahue
Nachtigall, Paul E. and Supin, Alexander Ya.Conditioned frequency-dependent hearing sensitivity reduction in the bottlenose dolphin (Tursiops Truncatus)Journal of Experimental BiologyP.Nachtigall
Mary Hagedorn1,2*, Virginia Carter1,2Seasonal Vitrification Success of the Marine Dinoflagellate Coral Symbiont, Symbodinium sp.PLoS OneMary Hagedorn
KD Bahr, PL Jokiel and RJ ToonenThe unnatural history of Kāne‘ohe Bay: Coral reef resilience in the face of centuries of anthropogenic impactsPeer JR. Toonen
Tricas, T.C. and Boyle, K.S. 2015Diversity and evolution of sound production in the social behavior of Chaetodon butterflyfishesThe Journal of Experimental BiologyT.Tricas
Tricas, T.C. and Boyle, K.S. 2015.Sound pressure enhances the hearing sensitivity of Chaetodon butterflyfishes on noisy coral reefsThe Journal of Experimental BiologyT.Tricas
Mary Hagedorn1, Lynne R. Parenti2, Virginia Carter1, Zeehan Jaafar2,3, Kathleen S. Cole4Cryopreservation of Stem Cells:One of The Futures of Natural History Collections?BiosciencesM.Hagedorn
Fernandez-Silva I., Randall J.E., Coleman R.R., DiBattista J.D., Rocha L.A., Reimer J. D., Meyer C.G., Bowen B.WPhylogeography of the Indo-Pacific goatfish Mulloidichthys flavolineatus reveals isolation in peripheral provinces and cryptic evolutionary lineagesJournal of BiogeographyB.Bowen
DiBattista J.D., E. Waldrop, L.A. Rocha, M.T. Craig, M.L. Berumen, B.W. Bowen.Blinded by the bright: A lack of congruence between color morphs, phylogeography, and taxonomy in a cosmopolitan Indo-Pacific butterflyfish, Chaetodon aurigaJournal of BiogeographyB.Bowen
Michael Stat, Denise M. Yost and Ruth D. GatesGeographic structure and host-specificity shape the community composition of symbiotic dinoflagellates in corals from the Northwestern Hawaiian IslandsCoral ReefsR. Gates
Putnam HM and Gates RD (2015)Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditionsThe Journal of Experimental BiologyR. Gates
Chong Wei, Whitlow Au, Zhongchang Song, Yu ZhangThe role of various structures in the head on the formation of the biosonar beam of the Baiji (Lipotes vexillifer)Journal of the Acoustical Society of AmericaW. Au
KD Bahr, KS Rodgers, and PL JokielThe 2014 coral bleaching and freshwater flood events in Kāneʻohe Bay, HawaiʻiPeer JK. Rodgers/P. Jokiel
Giacomo Giorli, Whitlow W. L. Au, Anna NeuheimerDifferences in foraging activity of deep sea diving odontocetes in the Ligurian Sea as determined by passive acoustic recordersDeep sea Research Part IW. Au
Zac H. Forsman, Christopher A. Page, Robert J. Toonen, and David VaughanGrowing coral larger and faster: micro-colony-fusion as a strategy for accelerating coral cover (2015)Peer JZ. Forsman
Iacchei M, Gaither MR, Bowen BW, Toonen RJTesting dispersal limits in the sea: range-wide phylogeography of the pronghorn spiny lobster Panulirus penicillatusJournal of BiogeographyB.Bowen/R.Toonen
Weitzman, Joel S., Robert B. Zeller, Florence I.M. Thomas, Jeffrey R. KoseffThe attenuation of current- and wave-driven flow within submerged polycultural vegetative canopiesLimnology and OceanographyF. Thomas
Jungbluth, S. P., R. Bowers, H.-T. Lin, J. P. Cowen, and M. S. Rappé (2015)Subsurface fluids from basement basalt of the Juan de Fuca Ridge possess microbial communities that are distinct from overlying sediments and surrounding seawaterThe ISME JournalM. Rappe
Oyafuso, ZS, Toonen RJ, Franklin EC.Temporal and spatial trends in prey composition of wahoo (Acanthocybium solandri): A diet analysis from the central North Pacific using visual and metabarcoding techniquesJournal of Fish BiologyE. Franklin/R. Toonen
Edmunds, P.J., J.J. Leichter, EC. Johnston, E. Tong & R.J. Toonen.Ecological and genetic variation in reef building corals on four islands in French PolynesiaLimnology & Oceanography, In pressR. Toonen
Nachigall, P., Pacini, AF, Supin, AY, Estaban, JALearning and extinction of conditioned hearing sensation change in the beluga whale (Delphinapterus leucas)Journal of Comparative Physiology AP. Nachtigall/A. Pacini
Kaleonani KC Hurley, Molly A Timmers, L Scott Godwin, Joshua M Copus, Derek J Skillings, Robert J ToonenAn assessment of shallow and mesophotic reef brachyuran crab assemblages on the south shore of Oʻahu, HawaiʻiCoral ReefsR. Toonen
Toonen, R.J., J. Briggs, M. Iacchei & B.W. Bowen.Marine BiogeographyEncyclopedia of Evolutionary BiologyB. Bowen/R. Toonen
Mary Hagedorn1,2*, Virginia Carter1,2, Clair Lager2, Julio F. Camperio Ciani1,2, Alison N. Dygert1,2, Reuben D. Schleiger1,2 and E. Michael Henley1,2Potential bleaching effects on coral reproductionReproduction, Fertility and DevelopmentM. Hagedorn
Ross Cunning. Denise M Yost, Marisa L Guarinello, Hollie M Putnam, Ruth D GatesVariability of Symbiodinium communities in waters, sediments, and corals of thermally distinct reef pools in American SamoaPLoS ONER. Gates
Adam B. Smith, Laura N. Kloepper, Wei-Cheng Yang, Wan-Hsiu Huang, I-Fan Jen, Brendan P. Rideout, Paul E. NachtigallTransmission beam pattern of a Risso's dolphin (Grampus griseus)Journal of the Acoustical Society of AmericaP. Nachtigall/A. Smith
Keisha D. Bahr, Paul L. Jokiel, Ku’ulei S. RodgersRelative sensitivity of five Hawaiian coral species to high temperature under high pCO2 conditionsCoral ReefsP. Jokiel/K. Rodgers
Jessica Chen, Adam A. Pack, Whitlow W.L. Au, and Alison K. Stimpert.First measurements of humpback whale song sound levels received by a calf in association with a singerJournal of the Acoustical Society of AmericaW. Au/J. Chen
Kapur MR, Franklin EC (2016) Predicting climate impacts on coral reef fishes: are contemporary spatial fishery management strategies sufficient? Canadian Journal of Fisheries and Aquatic SciencesE. Franklin
Winston MS, Taylor BM Franklin EC (2016) Intraspecific variability in the life history of endemic coral reef fishes between photic and mesophotic depths in the central Pacific Ocean. Coral ReefsE. Franklin
DiBattista, J.D., M.R. Gaither, J.-P. A. Hobbs, L.A. Rocha, B.W. Bowen. Angelfishes, paper tigers, and the devilish taxonomy of the Centropyge flavissima complex. Journal of HeredityB. Bowen
Giacomo Giorli, Anna Neuheimer, Adrienne Copeland, and Whitlow W.L. AuTemporal and spatial variation of beaked and sperm whales foraging activity in Hawai'i, as determined with passive acoustics. Journal of the Acoustical Society of AmericaW. Au
Paul E. Nachtigall, Alexander Ya. Supin, Aude F. Pacini, and Roland A. KasteleinConditioned hearing sensitivity change in the harbor porpoise (Phocoena phocoena). Journal of Acoustical Society of America.P. Nachtigall/A. Pacini
Giacomo Giorli, Anna Neuheimer , Whitlow W. L. Au Spatial variation of deep diving odontocetes' occurrence around a canyon region in the Ligurian Sea as measured with acoustic techniques. Deep Sea Research Part IW. Au
Cros A, Toonen RJ, Davies SW, Karl SA (2016)Population genetic structure between Yap and Palau for the coral Acropora hyacinthus. PeerJS. Karl/R. Toonen
Hollie M. Putnam, Jennifer M. Davidson, Ruth D. GatesOcean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals.
Evolutionary ApplicationsR. Gates
Veazey L, Franklin EC, Kelley C, Rooney J, Frazer NL, Toonen RJ (2016) The implementation of rare events logistic regression to predict the distribution of mesophotic hard corals across the main Hawaiian Islands.
PeerJE. Franklin/R. Toonen
Wren, J. L.K., D. R. Kobayashi, Y. Jia, and R. J. Toonen. 2016. Modeled population connectivity across the Hawaiian Archipelago.PLoS OneR. Toonen
Concepcion, G.T., J. Kenyon, I.B. Baums & R.J. Toonen (2016) Genetic evidence for possible coral larval dispersal from the Northern Line Islands to the Hawaiian Archipelago.GalaxeaR. Toonen
DiBattista J.D., J. Whitney, M.T. Craig, J.-P. A. Hobbs, L.A. Rocha, K.A. Feldheim, M.L. Berumen, B.W. BowenSurgeons and suture zones: hybridization among four surgeonfish species in the Indo-Pacific with variable evolutionary outcomes.Molecular Phylogenetics and EvolutionB. Bowen
J.H.R.Burns, D. Delparte, L. Kapono, M. Belt, R.D. Gates and M. TakabayashiAssessing the impact of acute disturbances on the structure and composition of a coral community using innovative 3D reconstruction techniques.Methods in OceanographyR. Gates
Ross Cunning, Raphael Ritson-Williams, Ruth D GatesPatterns of bleaching and recovery of Montipora capitata in Kaneohe Bay.Marine Ecology Progress SeriesR. Gates
KD Bahr, PL Jokiel, KS RodgersSeasonal and annual growth rates of the Hawaiian reef coral, Montipora capitata, under present and future climate change scenarios.ICES Journal of Marine SciencePL Jokiel, KS Rodgers
Bowen, B.W. The three domains of conservation genetics: Case histories from the Hawaiian waters.Journal of HeredityB. Bowen
Andrews, K.R., A.J. Williams, I. Fernandez-Silva, S.J. Newman, J.M. Copus, C. Wakefield, J.E. Randall, B.W. Bowen.Phylogeny of deepwater snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of the Atlantic.Molecular Phylogenetics and EvolutionB. Bowen/J.M. Copus
Coleman RR, Eble JA, DiBattista JD, Rocha LA, Randall JE, Berumen ML, Bowen BWRegal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean.Molecular Phylogenetics and EvolutionB. Bowen/R. Coleman
KD Bahr, PL Jokiel, KS RodgersInfluence of solar irradiance on underwater temperature recorded by temperature loggers on coral reefs.Limnology and Oceanography: MethodsP. Jokiel/K. Rodgers
Nachtigall, P.E., Supin, A. Ya., Smith, A.B., and Pacini, A.F Expectancy and conditioned hearing levels in the bottlenose dolphin (Tursiops truncatus).Journal of Experimental BiologyP. Nachtigall/A. Pacini
Nyssa Silbiger; Òscar Guadayol; Florence I.M. Thomas; Megan DonahueA novel microCT analysis to calculate coral reef bioerosion and secondary accretion rates.PLoS OneM. Donahue/F. Thomas
Laetitia Hedouin, Ruth E Wolf, Jeff Phillips and Ruth D GatesImproving The Ecological Relevance of Toxicity Tests On Scleractinian Corals: Influence of Season, Life Stage, and Seawater Temperature.Environmental PollutionR. Gates
Whitlow W. L Au, Stephen W. Martin, Patrick W. Moore,
Brian Branstetter, Adrienne M. Copeland
Dynamics of biosonar signals in free-swimming and stationary dolphins: The role of source levels on the characteristics of the signals.Journal of the Acoustical Society of AmericaW. Au
Mary Hagedorn, Virginia CarterCryobiology: Principles, Species Conservation and Benefits For Coral Reefs.Journal of Reproduction, Fertility and DevelopmentM. Hagedorn
Paul E. NachtigallBiosonar and Sound Localization in DolphinsOxford Research Encyclopedia of NeuroscienceP. Nachtigall
Jungbluth SP, Glavina del Rio T, Tringe S, Stepanauskas R, Rappe MS (2017)Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systemsPeerJM . Rappe
Jungbluth SP, Amend JP, Rappe MS (2017)Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge Flank subsurface fluidsScientific Data.M. Rappe
Giacomo Giorli, Whitlow W. L. AuSpatio-temporal variation and seasonality of Odontocetes' foraging activity in the leeward side of the island of HawaiiDeep Sea Research IW. Au
Cros A, Toonen RJ, Donahue MJ, Karl SAConnecting Palau¹s marine protected
areas: A population genetic approach to conservation
Coral ReefsS. Karl
Longenecker K., Langston R., Bolick H., Crane M., Donaldson T.J, Franklin E.C., Kelokelo M., Kondio U., Potuku T. 2017Rapid reproductive analysis and length–weight relations for five species of coral-reef fishes from Papua New Guinea: Nemipterus isacanthus, Parupeneus barberinus, Kyphosus cinerascens, Ctenochaetus striatus, and Balistapus undulatus.Acta Ichthyologica et PiscatoriaE. Franklin
Garen Baghdasarian, Andrew Osberg, Danielle Mihora, Hollie Putnam, Ruth D. Gates, Peter J. EdmundsThe effects of temperature and pCO2 on the population regulation of Symbiodinium spp. in a tropical reef coralBiological BulletinR. Gates
Emilia Sogin, Hollie Putnam, Craig Nelson, Paul Anderson, Ruth GatesCorrespondence of coral holobiont metabolome with symbiotic bacteria, archaea and Symbiodinium communitiesEnvironmental Microbiology and Environmental Microbiology ReportsR. Gates
Puritz, J. B., C. C. Keever, J. A. Addison, S. S. Barbosa, M. Byrne, M. W. Hart, R. K. Grosberg, and R. J. Toonen (2017).Life History Predicts Past and Present Population Connectivity in Two Sympatric Sea StarsEcology & Evolution. In press.ToBo
McFadden C, Haverkort-Yeh R, Reynolds A, Halasz A, Quattrini A, Forsman ZH, Benayahu Y, Toonen RJSpecies boundaries in
the absence of morphological, ecological or geographical
differentiation in the Red Sea octocoral genus Ovabunda (Alcyonacea:
Xeniidae).
Molecular Phylogenetics and EvolutionToBo
Forsman ZH, Knapp ISS, Eaton DAR, Belcaid M, Toonen RJ Coral hybridization or polymorphism? Genomic data reveal gene flow
between Porites lobata and P. compressa.
Molecular Phylogenetics and
Evolution.
ToBo
Ku'ulei Rodgers, Keisha Bahr, Angela Richards DonaPatterns of bleaching and mortality following widespread warming events in 2014 and 2015 at the Hanauma Bay Nature Preserve, Hawai‘iPeerJPoint
Hollie M. Putnam1,5*, Katie L. Barott2,3,5, Tracy D. Ainsworth4 and Ruth D. Gates3The Vulnerability and Resilience of Reef-Building CoralsCurrent BiologyR. Gates
Oyafuso, Z.S., J.C. Drazen, C.H. Moore, and E.C. FranklinHabitat-based species distribution models of Hawaiian deep-slope fishes with implications for fisheries managementFisheries ResearchE. Franklin
Longenecker K, Langston R, Bolick H, Crane M, Donaldson T, Franklin EC, Kelokelp M, Kondio U, Potuku T (2017) Rapid reproductive analysis and length-weight relations for five species of coral-reef fishes (Actinopterygii) from Papua New Guinea: Nemipterus Isacanthus, Parupeneus barberinus, Kyphosus cinerascens, Ctenochaetus striatus, and Balistapus unduluatus.Acta Ichthyologica et PiscatoriaE. Franklin
Nyssa Silbiger, Megan Donahue, Rusty BrainardEnvironmental drivers of coral reef carbonate production and bioerosion: a multi-scale analysisEcologyM. Donahue
Brown, D. P., et al. [Z. H. Forsman], 2009American Samoa's island of giants: massive Porites colonies at Ta'u islandCoral ReefsZ. Forsman
Forsman, Z. H., and C. Birkeland, 2009Porites randalli: a new coral species (Scleractinia, Poritidae) from American SamoaZootaxaZ. Forsman
Forsman, Z. H., D. Barshis, C. L. Hunter, and R. J. Toonen, 2009Shape-shifting corals: Molecular markers show morphology is evolutionarily plastic in PoritesBMC Evol. Biol.Z. Forsman / R. Toonen
Luck, D. G., Z. H. Forsman, R. J. Toonen, S. J. Leicht, and S. E. Kahng, 2013Polyphyly and hidden species among in Hawai'i's dominant mesophotic coral genera, Leptoseris and Pavona (Scleractinia: Agariciidae)PeerJZ. Forsman / R. Toonen
Price, M. R., Z. H. Forsman, I. S. Knapp, R. J. Toonen, and M. G. Hadfield, 2016The complete mitochondrial genome of Achatinella sowerbyana (Gastropoda: Pulmonata: Stylommatophora: Achatinellidae)Mitochond. DNA BZ. Forsman / R. Toonen
Colín García, N. A., et al. [Z. H. Forsman], 2017Comparative molecular and morphological variation of Siderastrea stellata in the Gulf of MexicoBiol. BullZ. Forsman
Prada, C., et al. [Z. H. Forsman], 2014Genetic species delineation among branching Caribbean Porites coralsCoral ReefsZ. Forsman
Knapp, I. S., et al. [Z. H. Forsman, R. J. Toonen], 2015Cryptic species obscure introduction pathway of the blue Caribbean sponge (Haliclona (Soestella) caerulea), (order: Haplosclerida) to Palmyra Atoll, Central PacificPeerJZ. Forsman
Capel, K. C. C., et al. [Z. H. Forsman], 2016The mitochondrial genomes from the Atlantic invasive coral species, Tubastraea coccinea and T. tagusensis (Scleractinia, Dendrophylliidae): Implications for species identificationGeneZ. Forsman
LaJeunesse, T. C., Z. H. Forsman, and D. C. Wham, 2016An Indo-West Pacific ‘zooxanthella’ invasive to the western Atlantic finds its way to the Eastern Pacific via an introduced Caribbean coralCoral ReefsZ. Forsman
Tisthammer, K. H., et al. [Z. H. Forsman, R. J. Toonen], 2016The complete mitochondrial genome of the lobe coral Porites lobata (Anthozoa:Scleractinia) sequenced using ezRADMitochond. DNA BZ. Forsman / R. Toonen
Wilcox C.L., H. Motomura, M. Matsunuma, B.W. Bowen. 2017.Phylogeographic analyses of lionfish (Pterois) species indicate taxonomic oversplitting and hybrid origin for the invasive Pterois volitansJournal of Heredity In pressB. Bowen
Franklin EC (2017) Vagrancy in paradise: documentation of the chevron butterflyfish Chaetodon trifascialis in Kaneohe Bay, Oahu, Hawaiian IslandsMarine Biodiversity RecordsE. Franklin
C.B. Wall, R.A.B. Mason, W.R. Ellis, R. Cunning, R.D. Gates
Elevated pCO2 affects tissue biomass composition, but not calcification, in a reef coral under two light regimes.
Royal Society Open ScienceR. Gates
Mary Hagedorn1,2*, Virginia L. Carter1,2, E. Michael Henley2, Madeleine JH van Oppen3,4, Rebecca Hobbs5, Rebecca Spindler5Producing Coral Offspring with Cryopreserved Sperm: A Tool for Coral Reef RestorationNature Scientific ReportsHagedorn, Mary
Julian A. Tyne, Fredrik Christiansen, Heather L. Heenehan, David W. Johnston and Lars BejderChronic exposure of Hawaii Island spinner dolphins (Stenella longirostris) to human activities.Royal Society Open Science.Bejder, L
Krützen, M, Beasley, I., Ackermann, C.Y., Lieckfeldt, D., Ludwig, A., Ryan, G., Bejder, L., Parra, G., Wolfensberger, R. and Spencer, P.Demographic collapse and low genetic diversity of the Irrawaddy dolphin population inhabiting the Mekong River. PLOS ONE. Bejder, L
Jonathan L. Whitney, Megan J. Donahue, and Stephen A. KarlNiche divergence along a fine-scale ecological gradient in sympatric color morphs of a coral reef fishEcosphereDonahue/Karl
Jeremy Claisse, Daniel Pondella II, Jonathan Williams, Chelsea Williams, Morgan Winston
Age and growth of the Giant Kelpfish, Heterostichus rostratus Girard 1854, in southern California, USAJournal of Applied IchthyologyE. Franklin